IL_8RDV_134
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- CGUAAAG*CG
- Length
- 9 nucleotides
- Bulged bases
- 8RDV|1|iN|A|615
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_134 not in the Motif Atlas
- Homologous match to IL_4LFB_022
- Geometric discrepancy: 0.0772
- The information below is about IL_4LFB_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_20847.1
- Basepair signature
- cWW-L-cWW-L-L-R
- Number of instances in this motif group
- 5
Unit IDs
8RDV|1|iN|C|612
8RDV|1|iN|G|613
8RDV|1|iN|U|614
8RDV|1|iN|A|615
8RDV|1|iN|A|616
8RDV|1|iN|A|617
8RDV|1|iN|G|618
*
8RDV|1|iN|C|924
8RDV|1|iN|G|925
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain E5
- Small ribosomal subunit protein uS5
- Chain L6
- Small ribosomal subunit protein uS12
- Chain QZ
- Small ribosomal subunit protein uS17
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