IL_8RDV_144
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GGUAG*UC
- Length
- 7 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_144 not in the Motif Atlas
- Homologous match to IL_4LFB_032
- Geometric discrepancy: 0.0646
- The information below is about IL_4LFB_032
- Detailed Annotation
- Left turn
- Broad Annotation
- Left turn
- Motif group
- IL_29346.3
- Basepair signature
- cWW-L-cWW-L-L
- Number of instances in this motif group
- 3
Unit IDs
8RDV|1|iN|G|818
8RDV|1|iN|G|819
8RDV|1|iN|U|820
8RDV|1|iN|A|821
8RDV|1|iN|G|822
*
8RDV|1|iN|U|848
8RDV|1|iN|C|849
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain Cl
- Large ribosomal subunit protein uL2
- Chain KU
- Small ribosomal subunit protein uS11
- Chain NV
- Small ribosomal subunit protein bS21
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: