IL_8RDV_145

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_145 not in the Motif Atlas

Homologous match to IL_4LFB_033

Geometric discrepancy: 0.0881

The information below is about IL_4LFB_033

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_05821.1

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

17

Unit IDs

8RDV|1|iN|C|823
8RDV|1|iN|A|824
8RDV|1|iN|A|825
8RDV|1|iN|A|826
8RDV|1|iN|C|827
*
8RDV|1|iN|G|843
8RDV|1|iN|G|844
8RDV|1|iN|U|845
8RDV|1|iN|A|846
8RDV|1|iN|G|847

Current chains

Chain iN

16S rRNA

Nearby chains

Chain KU

Small ribosomal subunit protein uS11

Chain NV

Small ribosomal subunit protein bS21

Chain Z2

Large subunit ribosomal RNA; LSU rRNA