IL_8RDV_146

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_146 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0619

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

8RDV|1|iN|G|931
8RDV|1|iN|G|932
8RDV|1|iN|A|933
8RDV|1|iN|G|934
8RDV|1|iN|U|935
8RDV|1|iN|A|936
8RDV|1|iN|C|937
8RDV|1|iN|G|938
*
8RDV|1|iN|U|949
8RDV|1|iN|A|950
8RDV|1|iN|A|951
8RDV|1|iN|A|952
8RDV|1|iN|A|953
8RDV|1|iN|C|954

Current chains

Chain iN

16S rRNA

Nearby chains

Chain L6

Small ribosomal subunit protein uS12