IL_8RDV_151

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GACAU*AC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_151 not in the Motif Atlas

Homologous match to IL_6CZR_151

Geometric discrepancy: 0.2051

The information below is about IL_6CZR_151

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_47078.2

Basepair signature

cWW-cWS-L-cWW-L

Number of instances in this motif group

6

Unit IDs

8RDV|1|iN|G|1037
8RDV|1|iN|A|1038
8RDV|1|iN|C|1039
8RDV|1|iN|A|1040
8RDV|1|iN|U|1041
*
8RDV|1|iN|A|1088
8RDV|1|iN|C|1089

Current chains

Chain iN

16S rRNA

Nearby chains

Chain HK

Small ribosomal subunit protein uS14