IL_8RDV_154

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGCAU*AUG

Length

8 nucleotides

Bulged bases

8RDV|1|iN|C|1098

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_154 not in the Motif Atlas

Homologous match to IL_4LFB_044

Geometric discrepancy: 0.0831

The information below is about IL_4LFB_044

Detailed Annotation

Isolated cWS basepair

Broad Annotation

No text annotation

Motif group

IL_82453.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

5

Unit IDs

8RDV|1|iN|U|1096
8RDV|1|iN|G|1097
8RDV|1|iN|C|1098
8RDV|1|iN|A|1099
8RDV|1|iN|U|1100
*
8RDV|1|iN|A|1249
8RDV|1|iN|U|1250
8RDV|1|iN|G|1251

Current chains

Chain iN

16S rRNA

Nearby chains

Chain CT

Small ribosomal subunit protein uS3

Chain HK

Small ribosomal subunit protein uS14

Chain JY

Small ribosomal subunit protein uS10