IL_8RDV_155

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GG*UCAUC

Length

7 nucleotides

Bulged bases

8RDV|1|iN|C|1245, 8RDV|1|iN|A|1246

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_155 not in the Motif Atlas

Homologous match to IL_5J7L_048

Geometric discrepancy: 0.1048

The information below is about IL_5J7L_048

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_95583.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

11

Unit IDs

8RDV|1|iN|G|1101
8RDV|1|iN|G|1102
*
8RDV|1|iN|U|1244
8RDV|1|iN|C|1245
8RDV|1|iN|A|1246
8RDV|1|iN|U|1247
8RDV|1|iN|C|1248

Current chains

Chain iN

16S rRNA

Nearby chains

Chain CT

Small ribosomal subunit protein uS3

Chain HK

Small ribosomal subunit protein uS14

Chain JY

Small ribosomal subunit protein uS10