IL_8RDV_158

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GUUAC*GAACUC

Length

11 nucleotides

Bulged bases

8RDV|1|iN|U|1170

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_158 not in the Motif Atlas

Homologous match to IL_5J7L_051

Geometric discrepancy: 0.1739

The information below is about IL_5J7L_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_06691.1

Basepair signature

cWW-cWS-L-R-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

8RDV|1|iN|G|1168
8RDV|1|iN|U|1169
8RDV|1|iN|U|1170
8RDV|1|iN|A|1171
8RDV|1|iN|C|1172
*
8RDV|1|iN|G|1189
8RDV|1|iN|A|1190
8RDV|1|iN|A|1191
8RDV|1|iN|C|1192
8RDV|1|iN|U|1193
8RDV|1|iN|C|1194

Current chains

Chain iN

16S rRNA

Nearby chains

Chain F

Small ribosomal subunit protein uS9

Chain JY

Small ribosomal subunit protein uS10