IL_8RDV_160
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- UACAGAG*CAAAAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_160 not in the Motif Atlas
- Homologous match to IL_4LFB_051
- Geometric discrepancy: 0.1367
- The information below is about IL_4LFB_051
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_12056.1
- Basepair signature
- cWW-L-R-R-bif-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RDV|1|iN|U|1292
8RDV|1|iN|A|1293
8RDV|1|iN|C|1294
8RDV|1|iN|A|1295
8RDV|1|iN|G|1296
8RDV|1|iN|A|1297
8RDV|1|iN|G|1298
*
8RDV|1|iN|C|1329
8RDV|1|iN|A|1330
8RDV|1|iN|A|1331
8RDV|1|iN|A|1332
8RDV|1|iN|A|1333
8RDV|1|iN|A|1334
8RDV|1|iN|G|1335
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS9
- Chain GS
- Small ribosomal subunit protein uS7
- Chain HK
- Small ribosomal subunit protein uS14
- Chain JY
- Small ribosomal subunit protein uS10
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