IL_8RDV_161
3D structure
- PDB id
- 8RDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.6 Å
Loop
- Sequence
- GCAG*CGAAUC
- Length
- 10 nucleotides
- Bulged bases
- 8RDV|1|iN|A|1302, 8RDV|1|iN|A|1325
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDV_161 not in the Motif Atlas
- Homologous match to IL_4LFB_052
- Geometric discrepancy: 0.1655
- The information below is about IL_4LFB_052
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_08849.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RDV|1|iN|G|1300
8RDV|1|iN|C|1301
8RDV|1|iN|A|1302
8RDV|1|iN|G|1303
*
8RDV|1|iN|C|1322
8RDV|1|iN|G|1323
8RDV|1|iN|A|1324
8RDV|1|iN|A|1325
8RDV|1|iN|U|1326
8RDV|1|iN|C|1327
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain CT
- Small ribosomal subunit protein uS3
- Chain F
- Small ribosomal subunit protein uS9
- Chain HK
- Small ribosomal subunit protein uS14
- Chain JY
- Small ribosomal subunit protein uS10
Coloring options: