IL_8RDV_162

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CUAC*GAUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_162 not in the Motif Atlas

Geometric match to IL_4V88_461

Geometric discrepancy: 0.2403

The information below is about IL_4V88_461

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_36174.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

8RDV|1|iN|C|1304
8RDV|1|iN|U|1305
8RDV|1|iN|A|1306
8RDV|1|iN|C|1307
*
8RDV|1|iN|G|1318
8RDV|1|iN|A|1319
8RDV|1|iN|U|1320
8RDV|1|iN|G|1321

Current chains

Chain iN

16S rRNA

Nearby chains

Chain HK

Small ribosomal subunit protein uS14