IL_8RDV_163

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CGGAUU*AUGAAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_163 not in the Motif Atlas

Homologous match to IL_4LFB_055

Geometric discrepancy: 0.1128

The information below is about IL_4LFB_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_57885.1

Basepair signature

cWW-tSH-tSH-tHS-cWW-cWW

Number of instances in this motif group

8

Unit IDs

8RDV|1|iN|C|1348
8RDV|1|iN|G|1349
8RDV|1|iN|G|1350
8RDV|1|iN|A|1351
8RDV|1|iN|U|1352
8RDV|1|iN|U|1353
*
8RDV|1|iN|A|1374
8RDV|1|iN|U|1375
8RDV|1|iN|G|1376
8RDV|1|iN|A|1377
8RDV|1|iN|A|1378
8RDV|1|iN|G|1379

Current chains

Chain iN

16S rRNA

Nearby chains

Chain MM

Small ribosomal subunit protein uS13