IL_8RDV_165

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

GCCC*GUAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_165 not in the Motif Atlas

Geometric match to IL_4V88_464

Geometric discrepancy: 0.0927

The information below is about IL_4V88_464

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65718.1

Basepair signature

cWW-cSH-cWS-cWW-cWW

Number of instances in this motif group

5

Unit IDs

8RDV|1|iN|G|1446
8RDV|1|iN|C|1447
8RDV|1|iN|C|1448
8RDV|1|iN|C|1449
*
8RDV|1|iN|G|1542
8RDV|1|iN|U|1543
8RDV|1|iN|A|1544
8RDV|1|iN|A|1545
8RDV|1|iN|C|1546

Current chains

Chain iN

16S rRNA

Nearby chains

Chain V

Heterogenous tRNA

Chain Y

Heterogenous mRNA

Chain Z2

Large subunit ribosomal RNA; LSU rRNA