IL_8RDV_167

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

CAC*GAAG

Length

7 nucleotides

Bulged bases

8RDV|1|iN|A|1538

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_167 not in the Motif Atlas

Geometric match to IL_3C3Z_002

Geometric discrepancy: 0.3055

The information below is about IL_3C3Z_002

Detailed Annotation

Decoding loop related

Broad Annotation

Decoding loop related

Motif group

IL_29925.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

10

Unit IDs

8RDV|1|iN|C|1452
8RDV|1|iN|A|1453
8RDV|1|iN|C|1454
*
8RDV|1|iN|G|1536
8RDV|1|iN|A|1537
8RDV|1|iN|A|1538
8RDV|1|iN|G|1539

Current chains

Chain iN

16S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain L6

Small ribosomal subunit protein uS12

Chain Z2

Large subunit ribosomal RNA; LSU rRNA