IL_8RDV_175

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAUUGAUG*UUGAUCGAAG

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_175 not in the Motif Atlas

Homologous match to IL_5J7L_387

Geometric discrepancy: 0.0801

The information below is about IL_5J7L_387

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_61249.1

Basepair signature

cWW-L-R-L-R-tHS-cWW-cWW-tSH-tHS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

8RDV|1|Z2|U|1837
8RDV|1|Z2|U|1838
8RDV|1|Z2|A|1839
8RDV|1|Z2|A|1840
8RDV|1|Z2|U|1841
8RDV|1|Z2|U|1842
8RDV|1|Z2|G|1843
8RDV|1|Z2|A|1844
8RDV|1|Z2|U|1845
8RDV|1|Z2|G|1846
*
8RDV|1|Z2|U|1868
8RDV|1|Z2|U|1869
8RDV|1|Z2|G|1870
8RDV|1|Z2|A|1871
8RDV|1|Z2|U|1872
8RDV|1|Z2|C|1873
8RDV|1|Z2|G|1874
8RDV|1|Z2|A|1875
8RDV|1|Z2|A|1876
8RDV|1|Z2|G|1877

Current chains

Chain Z2

23S rRNA

Nearby chains