IL_8RDV_177

3D structure

PDB id

8RDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon, mRNA and P-site tRNA (structure 2).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UUAAC*GAAG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDV_177 not in the Motif Atlas

Geometric match to IL_8VTW_108

Geometric discrepancy: 0.3417

The information below is about IL_8VTW_108

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_49093.1

Basepair signature

cWW-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

8RDV|1|iN|U|1489
8RDV|1|iN|U|1490
8RDV|1|iN|A|1491
8RDV|1|iN|A|1492
8RDV|1|iN|C|1493
*
8RDV|1|iN|G|1500
8RDV|1|iN|A|1501
8RDV|1|iN|A|1502
8RDV|1|iN|G|1503

Current chains

Chain iN

16S rRNA

Nearby chains

Chain To

Small ribosomal subunit protein bS20