IL_8RDW_085

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CAG*CAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_085 not in the Motif Atlas

Geometric match to IL_5TBW_099

Geometric discrepancy: 0.2347

The information below is about IL_5TBW_099

Detailed Annotation

Isolated tHS basepair with bulges

Broad Annotation

No text annotation

Motif group

IL_71241.2

Basepair signature

cWW-cWW-tSH-cWW-L-L

Number of instances in this motif group

7

Unit IDs

8RDW|1|Z2|C|2280
8RDW|1|Z2|A|2281
8RDW|1|Z2|G|2282
*
8RDW|1|Z2|C|2300
8RDW|1|Z2|A|2301
8RDW|1|Z2|U|2302
8RDW|1|Z2|A|2303
8RDW|1|Z2|G|2304

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain D8

5S ribosomal RNA; 5S rRNA

Chain F7

Large ribosomal subunit protein uL5

Chain VH

Large ribosomal subunit protein bL27