IL_8RDW_103

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

UGUUC*GGUAG

Length

10 nucleotides

Bulged bases

8RDW|1|Z2|U|2672, 8RDW|1|Z2|U|2673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_103 not in the Motif Atlas

Homologous match to IL_5J7L_348

Geometric discrepancy: 0.0739

The information below is about IL_5J7L_348

Detailed Annotation

UAA/GAN related, with intercalation

Broad Annotation

UAA/GAN related, with intercalation

Motif group

IL_23774.1

Basepair signature

cWW-L-R-L-tHS-cWW

Number of instances in this motif group

11

Unit IDs

8RDW|1|Z2|U|2670
8RDW|1|Z2|G|2671
8RDW|1|Z2|U|2672
8RDW|1|Z2|U|2673
8RDW|1|Z2|C|2674
*
8RDW|1|Z2|G|2701
8RDW|1|Z2|G|2702
8RDW|1|Z2|U|2703
8RDW|1|Z2|A|2704
8RDW|1|Z2|G|2705

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Af

Large ribosomal subunit protein uL3

Chain MB

Large ribosomal subunit protein bL17

Chain Oi

Large ribosomal subunit protein bL19