IL_8RDW_124
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GAUUAG*CGACGAUC
- Length
- 14 nucleotides
- Bulged bases
- 8RDW|1|iN|U|287, 8RDW|1|iN|C|323
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_124 not in the Motif Atlas
- Homologous match to IL_4LFB_011
- Geometric discrepancy: 0.1002
- The information below is about IL_4LFB_011
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.4
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RDW|1|iN|G|285
8RDW|1|iN|A|286
8RDW|1|iN|U|287
8RDW|1|iN|U|288
8RDW|1|iN|A|289
8RDW|1|iN|G|290
*
8RDW|1|iN|C|320
8RDW|1|iN|G|321
8RDW|1|iN|A|322
8RDW|1|iN|C|323
8RDW|1|iN|G|324
8RDW|1|iN|A|325
8RDW|1|iN|U|326
8RDW|1|iN|C|327
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain L6
- Small ribosomal subunit protein uS12
- Chain QZ
- Small ribosomal subunit protein uS17
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