IL_8RDW_144
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- AGAAUU*AGGAAU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RDW_144 not in the Motif Atlas
- Homologous match to IL_5J7L_034
- Geometric discrepancy: 0.0867
- The information below is about IL_5J7L_034
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04668.2
- Basepair signature
- cWW-cWW-cWW-L-R-L-R-cWW
- Number of instances in this motif group
- 8
Unit IDs
8RDW|1|iN|A|717
8RDW|1|iN|G|718
8RDW|1|iN|A|719
8RDW|1|iN|A|720
8RDW|1|iN|U|721
8RDW|1|iN|U|722
*
8RDW|1|iN|A|756
8RDW|1|iN|G|757
8RDW|1|iN|G|758
8RDW|1|iN|A|759
8RDW|1|iN|A|760
8RDW|1|iN|U|761
Current chains
- Chain iN
- 16S rRNA
Nearby chains
- Chain Cl
- Large ribosomal subunit protein uL2
- Chain FG
- Small ribosomal subunit protein bS6
- Chain KU
- Small ribosomal subunit protein uS11
- Chain NV
- Small ribosomal subunit protein bS21
- Chain R3
- Small ribosomal subunit protein bS18
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