IL_8RDW_145

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

UGUAG*CGUAGAGA

Length

13 nucleotides

Bulged bases

8RDW|1|iN|A|746

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RDW_145 not in the Motif Atlas

Homologous match to IL_5J7L_035

Geometric discrepancy: 0.108

The information below is about IL_5J7L_035

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_01488.3

Basepair signature

cWW-tSS-tSH-L-R-tHS-L-cWW

Number of instances in this motif group

10

Unit IDs

8RDW|1|iN|U|728
8RDW|1|iN|G|729
8RDW|1|iN|U|730
8RDW|1|iN|A|731
8RDW|1|iN|G|732
*
8RDW|1|iN|C|743
8RDW|1|iN|G|744
8RDW|1|iN|U|745
8RDW|1|iN|A|746
8RDW|1|iN|G|747
8RDW|1|iN|A|748
8RDW|1|iN|G|749
8RDW|1|iN|A|750

Current chains

Chain iN

16S rRNA

Nearby chains

Chain KU

Small ribosomal subunit protein uS11

Chain Z2

Large subunit ribosomal RNA; LSU rRNA