IL_8RJB_053
3D structure
- PDB id
- 8RJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69243 Å
Loop
- Sequence
- GAAAG*CUAGUAGC
- Length
- 13 nucleotides
- Bulged bases
- 8RJB|1|K|A|1650, 8RJB|1|K|G|1654
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJB_053 not in the Motif Atlas
- Geometric match to IL_5TBW_028
- Geometric discrepancy: 0.0672
- The information below is about IL_5TBW_028
- Detailed Annotation
- tHW-tHW cross-strand stack
- Broad Annotation
- No text annotation
- Motif group
- IL_17470.7
- Basepair signature
- cWW-tWW-L-R-tWH-L-cWW
- Number of instances in this motif group
- 7
Unit IDs
8RJB|1|K|G|1522
8RJB|1|K|A|1523
8RJB|1|K|A|1524
8RJB|1|K|A|1525
8RJB|1|K|G|1526
*
8RJB|1|K|C|1648
8RJB|1|K|U|1649
8RJB|1|K|A|1650
8RJB|1|K|G|1651
8RJB|1|K|U|1652
8RJB|1|K|A|1653
8RJB|1|K|G|1654
8RJB|1|K|C|1655
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain a
- 60S ribosomal protein L27a
- Chain j
- Ribosomal protein L37
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