IL_8RJB_075
3D structure
- PDB id
- 8RJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69243 Å
Loop
- Sequence
- CGCCCGAU*GG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJB_075 not in the Motif Atlas
- Homologous match to IL_8C3A_052
- Geometric discrepancy: 0.1397
- The information below is about IL_8C3A_052
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
8RJB|1|K|C|1911
8RJB|1|K|G|1912
8RJB|1|K|C|1913
8RJB|1|K|C|1914
8RJB|1|K|C|1915
8RJB|1|K|G|1916
8RJB|1|K|A|1917
8RJB|1|K|U|1918
*
8RJB|1|K|G|2064
8RJB|1|K|G|2065
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain F
- Ribosomal Protein uL30
- Chain O
- 60S ribosomal protein L13
- Chain S
- 60S ribosomal protein L18a
- Chain f
- 60S ribosomal protein L35a
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