IL_8RJB_173

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

UUG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJB_173 not in the Motif Atlas

Geometric match to IL_4Y1M_005

Geometric discrepancy: 0.1721

The information below is about IL_4Y1M_005

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_07785.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

8RJB|1|u|U|79
8RJB|1|u|U|80
8RJB|1|u|G|81
*
8RJB|1|u|C|95
8RJB|1|u|U|96
8RJB|1|u|G|97

Current chains

Chain u

5S rRNA

Nearby chains

Chain F

Ribosomal Protein uL30

Chain K

Large subunit ribosomal RNA; LSU rRNA

Chain S

60S ribosomal protein L18a