IL_8RJC_009
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CC*GCG
- Length
- 5 nucleotides
- Bulged bases
- 8RJC|1|K|C|143
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_009 not in the Motif Atlas
- Geometric match to IL_1DQF_001
- Geometric discrepancy: 0.1867
- The information below is about IL_1DQF_001
- Detailed Annotation
- Single bulged C
- Broad Annotation
- No text annotation
- Motif group
- IL_61258.15
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 41
Unit IDs
8RJC|1|K|C|125
8RJC|1|K|C|126
*
8RJC|1|K|G|142
8RJC|1|K|C|143
8RJC|1|K|G|144
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
- Chain X
- Ribosomal_L23eN domain-containing protein
- Chain h
- 60S ribosomal protein L35
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: