IL_8RJC_012

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CC*GCG

Length

5 nucleotides

Bulged bases

8RJC|1|K|C|245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_012 not in the Motif Atlas

Geometric match to IL_1DQF_001

Geometric discrepancy: 0.3271

The information below is about IL_1DQF_001

Detailed Annotation

Single bulged C

Broad Annotation

No text annotation

Motif group

IL_61258.15

Basepair signature

cWW-L-cWW

Number of instances in this motif group

41

Unit IDs

8RJC|1|K|C|195
8RJC|1|K|C|196
*
8RJC|1|K|G|244
8RJC|1|K|C|245
8RJC|1|K|G|246

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain Y

Ribosomal protein L26

Chain v

5.8S ribosomal RNA; 5.8S rRNA