IL_8RJC_022

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

AUUCAAC*GCGCAUUU

Length

15 nucleotides

Bulged bases

8RJC|1|K|U|467, 8RJC|1|K|U|687

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJC|1|K|A|466
8RJC|1|K|U|467
8RJC|1|K|U|468
8RJC|1|K|C|469
8RJC|1|K|A|470
8RJC|1|K|A|471
8RJC|1|K|C|472
*
8RJC|1|K|G|682
8RJC|1|K|C|683
8RJC|1|K|G|684
8RJC|1|K|C|685
8RJC|1|K|A|686
8RJC|1|K|U|687
8RJC|1|K|U|688
8RJC|1|K|U|689

Current chains

Chain K

28S rRNA

Nearby chains

Chain E

60S ribosomal protein L6

Chain r

60S ribosomal protein L28