IL_8RJC_047

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GGAUC*GCGCAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_047 not in the Motif Atlas

Geometric match to IL_4V9F_018

Geometric discrepancy: 0.2983

The information below is about IL_4V9F_018

Detailed Annotation

Triple sheared related

Broad Annotation

Triple sheared

Motif group

IL_67427.1

Basepair signature

cWW-cWW-L-R-L-R-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RJC|1|K|G|1425
8RJC|1|K|G|1426
8RJC|1|K|A|1427
8RJC|1|K|U|1428
8RJC|1|K|C|1429
*
8RJC|1|K|G|1455
8RJC|1|K|C|1456
8RJC|1|K|G|1457
8RJC|1|K|C|1458
8RJC|1|K|A|1459
8RJC|1|K|C|1460

Current chains

Chain K

28S rRNA

Nearby chains

Chain Q

Ribosomal protein L18

Chain b

60S ribosomal protein L29