3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
GGG*UAAUC
Length
8 nucleotides
Bulged bases
8RJC|1|K|G|1625, 8RJC|1|K|A|1637, 8RJC|1|K|A|1638
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RJC_059 not in the Motif Atlas
Homologous match to IL_8C3A_036
Geometric discrepancy: 0.0699
The information below is about IL_8C3A_036
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_90991.8
Basepair signature
cWW-cWW
Number of instances in this motif group
6

Unit IDs

8RJC|1|K|G|1624
8RJC|1|K|G|1625
8RJC|1|K|G|1626
*
8RJC|1|K|U|1636
8RJC|1|K|A|1637
8RJC|1|K|A|1638
8RJC|1|K|U|1639
8RJC|1|K|C|1640

Current chains

Chain K
28S rRNA

Nearby chains

Chain A
Ribosomal protein L8
Chain B
Nascent chain
Chain N
Ribosomal protein L15
Chain P
uL22
Chain j
Ribosomal protein L37

Coloring options:


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