IL_8RJC_111

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CGAAGG*UGUUGACG

Length

14 nucleotides

Bulged bases

8RJC|1|K|A|3663, 8RJC|1|K|U|3679, 8RJC|1|K|C|3683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_111 not in the Motif Atlas

Homologous match to IL_5TBW_083

Geometric discrepancy: 0.0716

The information below is about IL_5TBW_083

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_64509.1

Basepair signature

cWW-tWW-tWW-tSS-L-cWW

Number of instances in this motif group

2

Unit IDs

8RJC|1|K|C|3660
8RJC|1|K|G|3661
8RJC|1|K|A|3662
8RJC|1|K|A|3663
8RJC|1|K|G|3664
8RJC|1|K|G|3665
*
8RJC|1|K|U|3677
8RJC|1|K|G|3678
8RJC|1|K|U|3679
8RJC|1|K|U|3680
8RJC|1|K|G|3681
8RJC|1|K|A|3682
8RJC|1|K|C|3683
8RJC|1|K|G|3684

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain p

60S ribosomal protein L37a