IL_8RJC_116
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- UCAAAGU*AAUGAAG
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_116 not in the Motif Atlas
- Homologous match to IL_8C3A_093
- Geometric discrepancy: 0.1814
- The information below is about IL_8C3A_093
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_36973.8
- Basepair signature
- cWW-tSH-L-R-L-R-L-R-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RJC|1|K|U|3715
8RJC|1|K|C|3716
8RJC|1|K|A|3717
8RJC|1|K|A|3718
8RJC|1|K|A|3719
8RJC|1|K|G|3720
8RJC|1|K|U|3721
*
8RJC|1|K|A|3732
8RJC|1|K|A|3733
8RJC|1|K|U|3734
8RJC|1|K|G|3735
8RJC|1|K|A|3736
8RJC|1|K|A|3737
8RJC|1|K|G|3738
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain i
- 60S ribosomal protein L36
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: