IL_8RJC_118

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CCAAAUGCCUCG*CGCG

Length

16 nucleotides

Bulged bases

8RJC|1|K|A|3785, 8RJC|1|K|C|3791, 8RJC|1|K|C|3810

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_118 not in the Motif Atlas

Geometric match to IL_5TBW_090

Geometric discrepancy: 0.0812

The information below is about IL_5TBW_090

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_66080.1

Basepair signature

cWW-cWW-tSH-L-cWW-L

Number of instances in this motif group

5

Unit IDs

8RJC|1|K|C|3781
8RJC|1|K|C|3782
8RJC|1|K|A|3783
8RJC|1|K|A|3784
8RJC|1|K|A|3785
8RJC|1|K|U|3786
8RJC|1|K|G|3787
8RJC|1|K|C|3788
8RJC|1|K|C|3789
8RJC|1|K|U|3790
8RJC|1|K|C|3791
8RJC|1|K|G|3792
*
8RJC|1|K|C|3808
8RJC|1|K|G|3809
8RJC|1|K|C|3810
8RJC|1|K|G|3811

Current chains

Chain K

28S rRNA

Nearby chains

Chain n

60S ribosomal protein L41