IL_8RJC_118
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CCAAAUGCCUCG*CGCG
- Length
- 16 nucleotides
- Bulged bases
- 8RJC|1|K|A|3785, 8RJC|1|K|C|3791, 8RJC|1|K|C|3810
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_118 not in the Motif Atlas
- Geometric match to IL_5TBW_090
- Geometric discrepancy: 0.0812
- The information below is about IL_5TBW_090
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_66080.1
- Basepair signature
- cWW-cWW-tSH-L-cWW-L
- Number of instances in this motif group
- 5
Unit IDs
8RJC|1|K|C|3781
8RJC|1|K|C|3782
8RJC|1|K|A|3783
8RJC|1|K|A|3784
8RJC|1|K|A|3785
8RJC|1|K|U|3786
8RJC|1|K|G|3787
8RJC|1|K|C|3788
8RJC|1|K|C|3789
8RJC|1|K|U|3790
8RJC|1|K|C|3791
8RJC|1|K|G|3792
*
8RJC|1|K|C|3808
8RJC|1|K|G|3809
8RJC|1|K|C|3810
8RJC|1|K|G|3811
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain n
- 60S ribosomal protein L41
Coloring options: