3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
GCGAGC*GGCUCU
Length
12 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RJC_125 not in the Motif Atlas
Geometric match to IL_5TBW_476
Geometric discrepancy: 0.3569
The information below is about IL_5TBW_476
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_31007.1
Basepair signature
cWW-L-R-L-R-L-R-L-R-cWW
Number of instances in this motif group
5

Unit IDs

8RJC|1|K|G|4095
8RJC|1|K|C|4096
8RJC|1|K|G|4097
8RJC|1|K|A|4098
8RJC|1|K|G|4099
8RJC|1|K|C|4100
*
8RJC|1|K|G|4108
8RJC|1|K|G|4109
8RJC|1|K|C|4110
8RJC|1|K|U|4111
8RJC|1|K|C|4112
8RJC|1|K|U|4113

Current chains

Chain K
28S rRNA

Nearby chains

Chain G
60S ribosomal protein L7a
Chain g
60S ribosomal protein L34

Coloring options:


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