IL_8RJC_125

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GCGAGC*GGCUCU

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_125 not in the Motif Atlas

Geometric match to IL_5TBW_476

Geometric discrepancy: 0.3569

The information below is about IL_5TBW_476

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_31007.1

Basepair signature

cWW-L-R-L-R-L-R-L-R-cWW

Number of instances in this motif group

5

Unit IDs

8RJC|1|K|G|4095
8RJC|1|K|C|4096
8RJC|1|K|G|4097
8RJC|1|K|A|4098
8RJC|1|K|G|4099
8RJC|1|K|C|4100
*
8RJC|1|K|G|4108
8RJC|1|K|G|4109
8RJC|1|K|C|4110
8RJC|1|K|U|4111
8RJC|1|K|C|4112
8RJC|1|K|U|4113

Current chains

Chain K

28S rRNA

Nearby chains

Chain G

60S ribosomal protein L7a

Chain g

60S ribosomal protein L34