IL_8RJC_125
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GCGAGC*GGCUCU
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_125 not in the Motif Atlas
- Geometric match to IL_5TBW_476
- Geometric discrepancy: 0.3569
- The information below is about IL_5TBW_476
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_31007.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 5
Unit IDs
8RJC|1|K|G|4095
8RJC|1|K|C|4096
8RJC|1|K|G|4097
8RJC|1|K|A|4098
8RJC|1|K|G|4099
8RJC|1|K|C|4100
*
8RJC|1|K|G|4108
8RJC|1|K|G|4109
8RJC|1|K|C|4110
8RJC|1|K|U|4111
8RJC|1|K|C|4112
8RJC|1|K|U|4113
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L7a
- Chain g
- 60S ribosomal protein L34
Coloring options: