IL_8RJC_130

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GACC*GC

Length

6 nucleotides

Bulged bases

8RJC|1|K|C|4349

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_130 not in the Motif Atlas

Geometric match to IL_5J7L_032

Geometric discrepancy: 0.2609

The information below is about IL_5J7L_032

Detailed Annotation

Single stack bend

Broad Annotation

No text annotation

Motif group

IL_26793.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

16

Unit IDs

8RJC|1|K|G|4347
8RJC|1|K|A|4348
8RJC|1|K|C|4349
8RJC|1|K|C|4350
*
8RJC|1|K|G|4364
8RJC|1|K|C|4365

Current chains

Chain K

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L13

Chain Q

Ribosomal protein L18

Chain a

60S ribosomal protein L27a

Chain o

60S ribosomal protein L36a-like