IL_8RJC_134

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

GUG*UUUUU

Length

8 nucleotides

Bulged bases

8RJC|1|K|U|4437

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_134 not in the Motif Atlas

Homologous match to IL_5TBW_105

Geometric discrepancy: 0.088

The information below is about IL_5TBW_105

Detailed Annotation

Major groove minor groove platform with extra cWW

Broad Annotation

Major groove minor groove platform with extra cWW

Motif group

IL_63959.1

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

18

Unit IDs

8RJC|1|K|G|4405
8RJC|1|K|U|4406
8RJC|1|K|G|4407
*
8RJC|1|K|U|4435
8RJC|1|K|U|4436
8RJC|1|K|U|4437
8RJC|1|K|U|4438
8RJC|1|K|U|4439

Current chains

Chain K

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain w

Ribosomal protein L3