IL_8RJC_134
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GUG*UUUUU
- Length
- 8 nucleotides
- Bulged bases
- 8RJC|1|K|U|4437
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_134 not in the Motif Atlas
- Homologous match to IL_5TBW_105
- Geometric discrepancy: 0.088
- The information below is about IL_5TBW_105
- Detailed Annotation
- Major groove minor groove platform with extra cWW
- Broad Annotation
- Major groove minor groove platform with extra cWW
- Motif group
- IL_63959.1
- Basepair signature
- cWW-cSH-cWW-cWW
- Number of instances in this motif group
- 18
Unit IDs
8RJC|1|K|G|4405
8RJC|1|K|U|4406
8RJC|1|K|G|4407
*
8RJC|1|K|U|4435
8RJC|1|K|U|4436
8RJC|1|K|U|4437
8RJC|1|K|U|4438
8RJC|1|K|U|4439
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain I
- 60S ribosomal protein L10
- Chain w
- Ribosomal protein L3
Coloring options: