IL_8RJC_137

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CUC*GUGAG

Length

8 nucleotides

Bulged bases

8RJC|1|K|G|4522, 8RJC|1|K|A|4523

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_137 not in the Motif Atlas

Homologous match to IL_8C3A_116

Geometric discrepancy: 0.0607

The information below is about IL_8C3A_116

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_54650.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

16

Unit IDs

8RJC|1|K|C|4456
8RJC|1|K|U|4457
8RJC|1|K|C|4458
*
8RJC|1|K|G|4520
8RJC|1|K|U|4521
8RJC|1|K|G|4522
8RJC|1|K|A|4523
8RJC|1|K|G|4524

Current chains

Chain K

28S rRNA

Nearby chains

Chain B

Nascent chain

Chain V

Ribosomal protein L23

Chain w

Ribosomal protein L3