IL_8RJC_144

3D structure

PDB id

8RJC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.90061 Å

Loop

Sequence

CCAU*AGGCG

Length

9 nucleotides

Bulged bases

8RJC|1|K|C|4720

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJC_144 not in the Motif Atlas

Geometric match to IL_5TBW_114

Geometric discrepancy: 0.1341

The information below is about IL_5TBW_114

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

8RJC|1|K|C|4582
8RJC|1|K|C|4583
8RJC|1|K|A|4584
8RJC|1|K|U|4585
*
8RJC|1|K|A|4717
8RJC|1|K|G|4718
8RJC|1|K|G|4719
8RJC|1|K|C|4720
8RJC|1|K|G|4721

Current chains

Chain K

28S rRNA

Nearby chains

Chain O

60S ribosomal protein L13

Chain w

Ribosomal protein L3