3D structure

PDB id
8RJC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
Experimental method
ELECTRON MICROSCOPY
Resolution
2.90061 Å

Loop

Sequence
CCUCGGAUAGC*GUGCGGAGAG
Length
21 nucleotides
Bulged bases
8RJC|1|K|A|4764, 8RJC|1|K|G|4870, 8RJC|1|K|C|4871, 8RJC|1|K|G|4873, 8RJC|1|K|A|4876
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_8RJC_154 not in the Motif Atlas
Homologous match to IL_8P9A_352
Geometric discrepancy: 0.5795
The information below is about IL_8P9A_352
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
IL_42231.1
Basepair signature
cWW-L-R-L-cWW-L-cWW-cSS-L
Number of instances in this motif group
2

Unit IDs

8RJC|1|K|C|4756
8RJC|1|K|C|4757
8RJC|1|K|U|4758
8RJC|1|K|C|4759
8RJC|1|K|G|4760
8RJC|1|K|G|4761
8RJC|1|K|A|4762
8RJC|1|K|U|4763
8RJC|1|K|A|4764
8RJC|1|K|G|4765
8RJC|1|K|C|4766
*
8RJC|1|K|G|4868
8RJC|1|K|U|4869
8RJC|1|K|G|4870
8RJC|1|K|C|4871
8RJC|1|K|G|4872
8RJC|1|K|G|4873
8RJC|1|K|A|4874
8RJC|1|K|G|4875
8RJC|1|K|A|4876
8RJC|1|K|G|4877

Current chains

Chain K
28S rRNA

Nearby chains

Chain E
60S ribosomal protein L6
Chain H
60S ribosomal protein L9
Chain M
60S ribosomal protein L14
Chain O
60S ribosomal protein L13
Chain S
60S ribosomal protein L18a

Coloring options:


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