IL_8RJC_170
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- AUCUC*GAUCU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_170 not in the Motif Atlas
- Geometric match to IL_7RQB_114
- Geometric discrepancy: 0.1394
- The information below is about IL_7RQB_114
- Detailed Annotation
- Symmetric double minor groove platform
- Broad Annotation
- No text annotation
- Motif group
- IL_58103.6
- Basepair signature
- cWW-cWS-L-tSW-L-cWW
- Number of instances in this motif group
- 8
Unit IDs
8RJC|1|u|A|32
8RJC|1|u|U|33
8RJC|1|u|C|34
8RJC|1|u|U|35
8RJC|1|u|C|36
*
8RJC|1|u|G|41
8RJC|1|u|A|42
8RJC|1|u|U|43
8RJC|1|u|C|44
8RJC|1|u|U|45
Current chains
- Chain u
- 5S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain J
- 60S ribosomal protein L11
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: