IL_8RJC_173
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- GAUG*CGC
- Length
- 7 nucleotides
- Bulged bases
- 8RJC|1|u|U|84
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_173 not in the Motif Atlas
- Homologous match to IL_8C3A_149
- Geometric discrepancy: 0.0844
- The information below is about IL_8C3A_149
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- No text annotation
- Motif group
- IL_10289.2
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 237
Unit IDs
8RJC|1|u|G|82
8RJC|1|u|A|83
8RJC|1|u|U|84
8RJC|1|u|G|85
*
8RJC|1|u|C|92
8RJC|1|u|G|93
8RJC|1|u|C|94
Current chains
- Chain u
- 5S rRNA
Nearby chains
- Chain F
- Ribosomal Protein uL30
- Chain I
- 60S ribosomal protein L10
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain S
- 60S ribosomal protein L18a
Coloring options: