IL_8RJC_174
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- UAA*UCGA
- Length
- 7 nucleotides
- Bulged bases
- 8RJC|1|v|G|94
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJC_174 not in the Motif Atlas
- Homologous match to IL_5TBW_145
- Geometric discrepancy: 0.188
- The information below is about IL_5TBW_145
- Detailed Annotation
- Isolated non-canonical cWW pair
- Broad Annotation
- Isolated non-canonical cWW pair
- Motif group
- IL_54650.3
- Basepair signature
- cWW-cWW-cWW
- Number of instances in this motif group
- 16
Unit IDs
8RJC|1|v|U|64
8RJC|1|v|A|65
8RJC|1|v|A|66
*
8RJC|1|v|U|92
8RJC|1|v|C|93
8RJC|1|v|G|94
8RJC|1|v|A|95
Current chains
- Chain v
- 5.8S rRNA
Nearby chains
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain Y
- Ribosomal protein L26
- Chain h
- 60S ribosomal protein L35
- Chain j
- Ribosomal protein L37
Coloring options: