IL_8RJC_175
3D structure
- PDB id
- 8RJC (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.90061 Å
Loop
- Sequence
- CGAAU*AAAUGUG
- Length
- 12 nucleotides
- Bulged bases
- 8RJC|1|K|G|119, 8RJC|1|K|U|150
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJC|1|K|C|118
8RJC|1|K|G|119
8RJC|1|K|A|120
8RJC|1|K|A|121
8RJC|1|K|U|122
*
8RJC|1|K|A|147
8RJC|1|K|A|148
8RJC|1|K|A|149
8RJC|1|K|U|150
8RJC|1|K|G|151
8RJC|1|K|U|152
8RJC|1|K|G|153
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain G
- 60S ribosomal protein L7a
- Chain N
- Ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
Coloring options: