IL_8RJD_036

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GAAGGUGG*UGUUACAGC

Length

17 nucleotides

Bulged bases

8RJD|1|K|G|748, 8RJD|1|K|C|916

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_036 not in the Motif Atlas

Geometric match to IL_5TBW_020

Geometric discrepancy: 0.1571

The information below is about IL_5TBW_020

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_07703.1

Basepair signature

cWW-tSH-cSH-tWH-cSH-cHW-cWH-cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RJD|1|K|G|745
8RJD|1|K|A|746
8RJD|1|K|A|747
8RJD|1|K|G|748
8RJD|1|K|G|749
8RJD|1|K|U|750
8RJD|1|K|G|751
8RJD|1|K|G|752
*
8RJD|1|K|U|911
8RJD|1|K|G|912
8RJD|1|K|U|913
8RJD|1|K|U|914
8RJD|1|K|A|915
8RJD|1|K|C|916
8RJD|1|K|A|917
8RJD|1|K|G|918
8RJD|1|K|C|919

Current chains

Chain K

28S rRNA

Nearby chains

Chain M

60S ribosomal protein L14

Chain S

60S ribosomal protein L18a