IL_8RJD_059
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GGG*UAAUC
- Length
- 8 nucleotides
- Bulged bases
- 8RJD|1|K|G|1625, 8RJD|1|K|A|1637, 8RJD|1|K|A|1638
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_059 not in the Motif Atlas
- Geometric match to IL_5TBW_033
- Geometric discrepancy: 0.0948
- The information below is about IL_5TBW_033
- Detailed Annotation
- Multiple bulged bases
- Broad Annotation
- No text annotation
- Motif group
- IL_90991.8
- Basepair signature
- cWW-cWW
- Number of instances in this motif group
- 6
Unit IDs
8RJD|1|K|G|1624
8RJD|1|K|G|1625
8RJD|1|K|G|1626
*
8RJD|1|K|U|1636
8RJD|1|K|A|1637
8RJD|1|K|A|1638
8RJD|1|K|U|1639
8RJD|1|K|C|1640
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain A
- Ribosomal protein L8
- Chain B
- Nascent chain
- Chain N
- Ribosomal protein L15
- Chain P
- uL22
- Chain j
- Ribosomal protein L37
Coloring options: