IL_8RJD_095

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CGAUC*GGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RJD_095 not in the Motif Atlas

Homologous match to IL_5TBW_067

Geometric discrepancy: 0.2154

The information below is about IL_5TBW_067

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_95716.2

Basepair signature

cWW-cWW-tHS-tHS-tSH-cWW

Number of instances in this motif group

18

Unit IDs

8RJD|1|K|C|2589
8RJD|1|K|G|2590
8RJD|1|K|A|2591
8RJD|1|K|U|2592
8RJD|1|K|C|2593
*
8RJD|1|K|G|2752
8RJD|1|K|G|2753
8RJD|1|K|G|2754
8RJD|1|K|A|2755
8RJD|1|K|G|2756

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain Z

60S ribosomal protein L27

Chain g

60S ribosomal protein L34