IL_8RJD_100
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- UGGAAUG*CGAGAGA
- Length
- 14 nucleotides
- Bulged bases
- 8RJD|1|K|U|2661, 8RJD|1|K|A|2674
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_100 not in the Motif Atlas
- Homologous match to IL_5TBW_073
- Geometric discrepancy: 0.1281
- The information below is about IL_5TBW_073
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_60192.2
- Basepair signature
- cWW-tSH-tSH-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
8RJD|1|K|U|2656
8RJD|1|K|G|2657
8RJD|1|K|G|2658
8RJD|1|K|A|2659
8RJD|1|K|A|2660
8RJD|1|K|U|2661
8RJD|1|K|G|2662
*
8RJD|1|K|C|2672
8RJD|1|K|G|2673
8RJD|1|K|A|2674
8RJD|1|K|G|2675
8RJD|1|K|A|2676
8RJD|1|K|G|2677
8RJD|1|K|A|2678
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain Z
- 60S ribosomal protein L27
- Chain c
- Large ribosomal subunit protein eL30
- Chain g
- 60S ribosomal protein L34
- Chain p
- 60S ribosomal protein L37a
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