IL_8RJD_168
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GAACGCG*CUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RJD_168 not in the Motif Atlas
- Homologous match to IL_8C3A_144
- Geometric discrepancy: 0.1187
- The information below is about IL_8C3A_144
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_45841.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
8RJD|1|u|G|21
8RJD|1|u|A|22
8RJD|1|u|A|23
8RJD|1|u|C|24
8RJD|1|u|G|25
8RJD|1|u|C|26
8RJD|1|u|G|27
*
8RJD|1|u|C|52
8RJD|1|u|U|53
8RJD|1|u|A|54
8RJD|1|u|A|55
8RJD|1|u|G|56
8RJD|1|u|C|57
Current chains
- Chain u
- 5S rRNA
Nearby chains
- Chain D
- Ribosomal_L18_c domain-containing protein
- Chain J
- 60S ribosomal protein L11
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