IL_8RL2_113
3D structure
- PDB id
- 8RL2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human pre-60S - State 5
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.84 Å
Loop
- Sequence
- GAUUU*AUAC
- Length
- 9 nucleotides
- Bulged bases
- 8RL2|1|L5|A|4298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_8RL2_113 not in the Motif Atlas
- Geometric match to IL_5EW4_002
- Geometric discrepancy: 0.3106
- The information below is about IL_5EW4_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
8RL2|1|L5|G|4297
8RL2|1|L5|A|4298
8RL2|1|L5|U|4299
8RL2|1|L5|U|4300
8RL2|1|L5|U|4301
*
8RL2|1|L5|A|4311
8RL2|1|L5|U|4312
8RL2|1|L5|A|4313
8RL2|1|L5|C|4314
Current chains
- Chain L5
- 28S rRNA
Nearby chains
- Chain CB
- Nucleolar GTP-binding protein 2
- Chain CH
- Ribosome biogenesis protein NSA2 homolog
- Chain CJ
- Ribosome production factor 2 homolog
- Chain CK
- Ribosome biogenesis regulatory protein homolog
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