IL_8RPY_069

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

UGCAAAC*GGACGUAUA

Length

16 nucleotides

Bulged bases

8RPY|1|A|A|1801, 8RPY|1|A|C|1816, 8RPY|1|A|U|1820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_069 not in the Motif Atlas

Homologous match to IL_5J7L_313

Geometric discrepancy: 0.0669

The information below is about IL_5J7L_313

Detailed Annotation

Kink-turn related

Broad Annotation

No text annotation

Motif group

IL_17069.5

Basepair signature

cWW-tSH-tHH-cSS-tWW-tHH-tSS-cWW

Number of instances in this motif group

5

Unit IDs

8RPY|1|A|U|1798
8RPY|1|A|G|1799
8RPY|1|A|C|1800
8RPY|1|A|A|1801
8RPY|1|A|A|1802
8RPY|1|A|A|1803
8RPY|1|A|C|1804
*
8RPY|1|A|G|1813
8RPY|1|A|G|1814
8RPY|1|A|A|1815
8RPY|1|A|C|1816
8RPY|1|A|G|1817
8RPY|1|A|U|1818
8RPY|1|A|A|1819
8RPY|1|A|U|1820
8RPY|1|A|A|1821

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2