IL_8RPY_104

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUGAG*CGAGAUGAG

Length

14 nucleotides

Bulged bases

8RPY|1|A|G|2780

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_8RPY_104 not in the Motif Atlas

Homologous match to IL_5J7L_345

Geometric discrepancy: 0.1199

The information below is about IL_5J7L_345

Detailed Annotation

tSH-tHS-tHW

Broad Annotation

tSH-tHS-tHW

Motif group

IL_04638.3

Basepair signature

cWW-tSH-tHW-tHS-cSH-cWW-L

Number of instances in this motif group

5

Unit IDs

8RPY|1|A|C|2636
8RPY|1|A|U|2637
8RPY|1|A|G|2638
8RPY|1|A|A|2639
8RPY|1|A|G|2640
*
8RPY|1|A|C|2774
8RPY|1|A|G|2775
8RPY|1|A|A|2776
8RPY|1|A|G|2777
8RPY|1|A|A|2778
8RPY|1|A|U|2779
8RPY|1|A|G|2780
8RPY|1|A|A|2781
8RPY|1|A|G|2782

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

Large ribosomal subunit protein uL3

Chain J

Large ribosomal subunit protein uL13